http://plindenbaum.blogspot.com
from Whole-Exome Sequencing: Technical Details - James Mullikin  http://www.youtube.com/watch?v=nh8Mkz9IzKM

from Whole-Exome Sequencing: Technical Details - James Mullikin  http://www.youtube.com/watch?v=nh8Mkz9IzKM


My drawing of the skeleton of an elephant at Natural History Museum of Nantes.

My drawing of the skeleton of an elephant at Natural History Museum of Nantes.


Implementation of an Oil-Painting algorithm: http://supercomputingblog.com/graphics/oil-painting-algorithm.Source: https://github.com/lindenb/jsandbox/blob/master/src/sandbox/OilPainting.java java -jar src/jsandbox/dist/oilpainting.jar -r 5 -L 20 -o out.jpg 'http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Barbara_McClintock_at_C.S.H._1947.jpg/400px-Barbara_McClintock_at_C.S.H._1947.jpg'

Implementation of an Oil-Painting algorithm: http://supercomputingblog.com/graphics/oil-painting-algorithm.
Source: https://github.com/lindenb/jsandbox/blob/master/src/sandbox/OilPainting.java

java -jar src/jsandbox/dist/oilpainting.jar -r 5 -L 20 -o out.jpg 'http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Barbara_McClintock_at_C.S.H._1947.jpg/400px-Barbara_McClintock_at_C.S.H._1947.jpg'

Transforming mysql/xml to SVG for the UCSC. Reference: https://github.com/lindenb/xslt-sandbox/blob/master/stylesheets/bio/ucsc/ucsc-sql2svg.xsl  http://biostar.stackexchange.com/questions/6149

Transforming mysql/xml to SVG for the UCSC.

Reference: https://github.com/lindenb/xslt-sandbox/blob/master/stylesheets/bio/ucsc/ucsc-sql2svg.xsl  http://biostar.stackexchange.com/questions/6149


Custom shapes for “dia”.

Custom shapes for “dia”.


coverage/depth of a BAM file uploaded as a custom track in the UCSC genome browser.

coverage/depth of a BAM file uploaded as a custom track in the UCSC genome browser.


A GEXF file displayed using the GEXF Explorer.

A GEXF file displayed using the GEXF Explorer.


My first test with the GEPHI toolkit and some data from EMBL-String

My first test with the GEPHI toolkit and some data from EMBL-String


I just wrote a small java tool to paint a mosaic of my twitter friends/followers: https://github.com/lindenb/jsandbox/blob/master/src/sandbox/TwitterMosaic.java

I just wrote a small java tool to paint a mosaic of my twitter friends/followers: https://github.com/lindenb/jsandbox/blob/master/src/sandbox/TwitterMosaic.java


Delicious2diigo.java

I can’t wait for diigo.com to import my ~6000 bookmarks from delicious.

I wrote the following java tool which upload the bookmarks using the digoo API: https://gist.github.com/747381

It works fine so far….

javac Delicious2Diigo
curl -s "https://deliciouslogin:deliciouspassword@api.del.icio.us/v1/posts/all" |\
 java Delicious2Diigo | tac |\
 sed -e 's/__LOGIN__/mydiigologin/' -e 's/__PASSWORD__/mydiigopassword/' > file.sh

sh file.sh